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Listando por materia "Genome"

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    • 90 years of progesterone: molecular mechanisms of progesterone receptor action on the breast cancer genome 

      Beato, Miguel; Wright, Roni; Le Dily, François (Journal of Molecular Endocrinology, 2020)
      Gene regulation by steroid hormones has been at the forefront in elucidating the intricacies of transcriptional regulation in eukaryotes ever since the discovery by Karlson and Clever that the insect ...
    • Engineering a genome-reduced bacterium to eliminate Staphylococcus aureus biofilms in vivo 

      Garrido, Victoria; Piñero Lambea, Carlos; Rodriguez Arce, Irene; Paetzold, Bernhard; Ferrar, Tony; Weber, Marc; Garcia-Ramallo Pla, EVA; Gallo, Carolina; Collantes, María; Peñuelas, Ivan; Serrano, Luis; Grillo, Maria-Jesus; Lluch, Maria (Molecular Systems Biology, 2021)
      Bacteria present a promising delivery system for treating human diseases. Here, we engineered the genome-reduced human lung pathogen Mycoplasma pneumoniae as a live biotherapeutic to treat biofilm-associated ...
    • Hormone-control regions mediate steroid receptor–dependent genome organization 

      Le Dily, François; Vidal, Enrique; Cuartero, Yasmina; Quilez Oliete, Javier; Nacht, A. Silvina; Vicent, Guillermo P.; Carbonell-Caballero, José; Sharma, Priyanka; Villanueva-Cañas, José Luis; Ferrari, Roberto; De Llobet, Lara Isabel; Verde, Gaetano; Wright, Roni; Beato, Miguel (Genome Research, 2019)
      In breast cancer cells, some topologically associating domains (TADs) behave as hormonal gene regulation units, within which gene transcription is coordinately regulated in response to steroid hormones. ...
    • The IronChip evaluation package: a package of perl modules for robust analysis of custom microarrays 

      Vainshtein, Yevhen; Sanchez, Mayka; Brazma, Alvis; W. Hentze, Matthias; Dandekar, Thomas; Muckenthaler, Martina U. (BMC Bioinformatics, 2010)
      Background: Gene expression studies greatly contribute to our understanding of complex relationships in gene regulatory networks. However, the complexity of array design, production and manipulations ...
    • LoxTnSeq: random transposon insertions combined with cre/lox recombination and counterselection to generate large random genome reductions 

      Shaw, Daniel; Miravet-Verde, Samuel; Piñero Lambea, Carlos; Serrano, Luis; Lluch, Maria (Microbial Biotechnology, 2021)
      The removal of unwanted genetic material is a key aspect in many synthetic biology efforts and often requires preliminary knowledge of which genomic regions are dispensable. Typically, these efforts are ...
    • Rapid identification, capsular typing and molecular characterization of streptococcus pneumoniae by using whole genome nanopore sequencing 

      Garcia-Garcia, Selene; Perez-Arguello, A.; Henares, Desirée; Timoneda, N.; Muñoz-Almagro, Carmen (BMC Microbiology, 2020)
      Background: Whole genome sequencing has emerged as a useful tool for identification and molecular characterization of pathogens. MinION (Oxford Nanopore) is a real-time third generation sequencer whose ...
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